YFitter Assign haplogroups using maximum likelihood
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genotype chromosome

YFitter Description

Yfitter is an application designed for assigning Y chromosome haplogroups to individuals sequenced at a low coverage. The program uses a dynamic programming approach to find the maximum likelihood haplogroup given the reads observed, and is designed to be used in a samtools / bcftools pipeline. Yfitter also supports haplogrouping using chip genotype data.

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