StatAlignSoftware for Bayesian analysis of Protein, DNA and RNA sequences | |
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StatAlign Ranking & Summary
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- License:
- Freeware
- Publisher Name:
- ?dám Novák, István Miklós, Rune Lyngsoe, Jotun Hein
- Operating Systems:
- Windows All
- File Size:
- 4.8 MB
StatAlign Tags
- analysis protein Bayesian estimation Bayesian RNA Batch RNA analyze protein DNA analysis DNA stretching DNA analysis DNA analyzer RNA world DNA to RNA RNA to Aminoacid protein analysis RNA polymerase Naive Bayesian Classifier study Bayesian network DNA data set analysis RNA structure phylogeny Bayesian estimation RNA-seq data analysis Bayesian network editor edit Bayesian network bayesian alignment solve Bayesian Nets Bayesian analisis Bayesian method implementation Bayesian method RNA sequence analysis protein-coding DNA sequence Protein Data Bank analysis Bayesian analysis RNA sequence protein-coding gene analysis view protein sequences protein sequences viewer edit DNA sequences DNA sequences editor Bayesian tree analysis DNA sequences analysis analyze DNA sequences protein sequences analysis aligned DNA sequences DNA sequences align protein sequences protein sequences alignment Bayesian MCMC analysis protein families analysis RNA secondary structures polypeptide sequences analysis RNA analysis DNA methylation analysis metagenomic sequences analysis RNA Alignment RNA sequences analyze analyze RNA sequences RNA Ontology Consortium RNA backbone nomenclature DNA restriction analysis bayesian filtering wassup software smart movie software data entry speed www.nokia n72 software.com wifi password cracker bluetooth software for ericsson one touch opera mini na mp3 mixer for windows undelete unformat cheap joe 39
StatAlign Description
StatAlign is an advanced and open source application designed to enable you to perform DNA analysis. Multiple alignments, phylogenetic trees and evolutionary parameters are co-estimated in a Markov Chain Monte Carlo framework, allowing for reliable measurement of the accuracy of the results. This approach eliminates common artifacts that traditional methods suffer from, at the cost of increased computational time. These artifacts include the dependency of the constructed phylogeny on a single (probably suboptimal) alignment and bias towards the guide tree upon which the alignment relies. The models behind the analysis permit the comparison of evolutionarily distant sequences: the TKF92 insertion-deletion model can be coupled to an arbitrary substitution model. A broad range of models for nucleotide and amino acid data is included in the package and the plug-in management system ensures that new models can be easily added.
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