PSSAT Protein sequences alignment made easy.
Download

PSSAT Ranking & Summary

PSSAT Tags

analysis Align retrieve protein text alignment column alignment alignment create alignment document alignment Protein Synthesizer alignment visualizeation manipulate alignment alignment manipulation DNA alignment protein extraction validate regulated protein alignment accuracy Protein Alignment protein dichroism multiple alignment alignment editor Alignment Method Protein Browser analyze protein sequence display alignment spliced alignment analyze pairwise alignment view alignment file display alignment file view protein sequences protein sequences viewer protein sequences analysis simulate protein evolution align protein sequences protein sequences alignment alingment alignment analysis Visualize Protein align protein sequence protein sequence alignment Protein Interaction render protein view protein files page alignment

PSSAT Description

PSSAT is a small, simple, very easy to use application specially designed to help you align two proteins, using secondary structure output predicted by PSIPRED. Developed in Haskell, using wxHaskell for GUI. This tool will create a visual global or local alignment of two proteins, using the following novel techniques: · Uses confidence intervals returned by PSIPRED to determine match scores · Affine gap penalty - alignments prefer long, continuous gaps over many short gaps · Includes original amino acid sequence for reference · Output in HTML format to aid in visualization, or as plain text

PSSAT Related Software