CoRe-PA Software tool for the reconstruction of cophylogenies
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CoRe-PA Tags

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CoRe-PA Description

CoRe-PA was developed to be a tool for reconstructing the coevolutionary history of host parasite systems. CoRe-PA is an Eclipse RCP application. You don't need to install the software. Just unzip the archive to a local folder and run the core-pa executable. Main features: design host parasite scenarios with a graphical editor generate random coevolutionary scenarios using the beta-split model with beta 0, -1 or -1.5 generate random coevolutionary scenarios by simulating coevolution generate random coevolutionary scenarios which "keep the character" of given host parasite systems handle non-binary host and parasite phylogenies choose between different behaviors of how to handle switches use divergence timing information compute the best reconstructions for a given set of costs compute the best cost vector for a given host parasite system (where the cost vector fits best to the reconstructed event frequencies) do randomization tests for given host parasite systems to analyze the probability of coevolution export host parasite scenarios and their reconstructions to svg

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