FindPeaks Performs analysis on ChIP-Seq experiments
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analyze experiment analyzer analyze experiment experiment analysis ChIP-Seq experiment

FindPeaks Description

Performs analysis on ChIP-Seq experiments Findpeaks is a free software developed to perform analysis of ChIP-Seq experiments. Findpeaks uses a naive algorithm for identifying regions of high coverage, which represent Chromatin Immunoprecipitation enrichment of sequence fragments, indicating the location of a bound protein of interest. A minimum height threshold is used to determine which "peaks" are shown in the UCSC compatible wig file - if no threshold is use, all reads are shown. Findpeaks collects and sorts the reads along each chromosomes, and identifies areas of enrichment, termed "Peaks". These peaks are particularly important in Chromatin Immunoprecipiation experiments (ChIP-Seq or ChIP-Solexa experiments), as they indicate the location of a bound protein of interest. Requirements: · Java What's New in This Release: · Bugfix: normalized FDR values

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