EBI-FGPT-FuzzyRecogniser

Parses ontology file's constructor
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EBI-FGPT-FuzzyRecogniser Ranking & Summary

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  • Rating:
  • License:
  • Perl Artistic License
  • Price:
  • FREE
  • Publisher Name:
  • Emma Hastings
  • Publisher web site:
  • http://search.cpan.org/~ehastings/

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EBI-FGPT-FuzzyRecogniser Description

EBI::FGPT::FuzzyRecogniser is a Perl module that takes in the constructor an ontology file (OWL/OBO/OMIM/MeSH) and parses it into an internal table of ontology terms (type of EBI::FGPT::FuzzyRecogniser::OntologyTerm). The module contains the find_match method which finds the best match for the supplied term in the given ontology. This can be then queried for ->match_similarity(), ->matched_value(), ->matched_label(), and ->matched_accession(). The best match is based on the n-grams similarity metric.SYNOPSIS use EBI::FGPT::FuzzyRecogniser; # instantiate and pass ontology file my $fuzzy = EBI::FGPT::FuzzyRecogniser->new( obofile => 'obo.txt' ); # call find_match on a supplied term # finds the best match for the supplied term in the ontology. my $x = $fuzzy->find_match('submitter');Product's homepage


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